Publications

Most of these publications may also be found on my google scholar profile.

Antibody-SGM: Antigen-Specific Joint Design of Antibody Sequence and Structure using Diffusion Models

Xuezhi Xie, Jin Sub Lee, Dongki Kim, Jaehyeong Jo, Jisun Kim, Philip M. Kim
ICML - Computational Biology, 2023: https://icml-compbio.github.io/2023/papers/WCBICML2023_paper143.pdf

HelixGAN a deep learning methodology for conditional de novo design of α-helix structures

Xuezhi Xie, Pedro A Valiente, Philip M Kim
Bioinformatics, 2023: https://academic.oup.com/bioinformatics/article/39/1/btad036/6991169

HelixGAN: A bidirectional Generative Adversarial Network with search in latent space for generation under constraints

Xuezhi Xie and Philip M. Kim.
Machine Learning for Structural Biology (MLSB) Workshop at NeurIPS, 2021: https://doi.org/10.1016/j.chemgeo.2015.10.024

MHCherryPan, a novel pan-specific model for binding affinity prediction of class I HLA-peptide

Xuezhi Xie, Yuanyuan Han, Kaizhong Zhang
Int. J. Data Mining and Bioinformatics, 2020: https://www.inderscienceonline.com/doi/abs/10.1504/IJDMB.2020.112850?mobileUi=0

MHCherryPan. a novel model to predict the binding affinity of pan-specific class I HLA-peptide

Xuezhi Xie, Yuanyuan Han, Kaizhong Zhang
IEEE International Conference on Bioinformatics and Biomedicine (IEEE - BIBM), 2019: https://ieeexplore.ieee.org/document/8982962